Protein family
Protein sequence
Protein function
Catalytic activity
EC number
EC number description
2.1.1.-
Transferases;
Transferring one-carbon groups;
Methyltransferases;
2.1.1.367
Transferases;
Transferring one-carbon groups;
Methyltransferases;
[histone H3]-lysine9 N-methyltransferase
| PDB | Resolution (Å) | PDB name |
|---|---|---|
| 2O8J | 1.8 | Human euchromatic histone methyltransferase 2 |
| 3DM1 | 2.4 | Crystal structure of the complex of human chromobox homolog 3 (CBX3) with peptide |
| 3K5K | 1.7 | Discovery of a 2,4-Diamino-7-aminoalkoxy-quinazoline as a Potent Inhibitor of Histone Lysine Methyltransferase, G9a |
| 3RJW | 2.56 | Crystal structure of histone lysine methyltransferase g9a with an inhibitor |
| 4NVQ | 2.03 | Human G9a in Complex with Inhibitor A-366 |
| 5JHN | 1.67 | Structure of G9a SET-domain with Histone H3K9Ala mutant peptide and bound S-adenosylmethionine |
| 5JIN | 1.85 | Structure of G9a SET-domain with Histone H3K9M mutant peptide and bound S-adenosylmethionine |
| 5JIY | 1.48 | Structure of G9a SET-domain with Histone H3K9norLeucine mutant peptide and bound S-adenosylmethionine |
| 5JJ0 | 1.72 | Structure of G9a SET-domain with Histone H3K9M peptide and excess SAH |
| 5T0K | 1.7 | Structure of G9a SET-domain with H3K9M mutant peptide and SAM |
| 5T0M | 1.896 | A histone H3K9M mutation traps histone methyltransferase Clr4 to prevent heterochromatin spreading |
| 5TTF | 1.72 | Crystal structure of catalytic domain of G9a with MS012 |
| 5TUY | 2.6 | Structure of human G9a SET-domain (EHMT2) in complex with inhibitor MS0124 |
| 5V9I | 1.74 | Crystal structure of catalytic domain of G9a with MS0105 |
| 5VSC | 1.4 | Structure of human G9a SET-domain (EHMT2) in complex with inhibitor 13 |
| 5VSE | 1.6 | Structure of human G9a SET-domain (EHMT2) in complex with inhibitor 17: N~2~-cyclopentyl-6,7-dimethoxy-N~2~-methyl-N~4~-(1-methylpiperidin-4-yl)quinazoline-2,4-diamine |
| 6MM1 | 1.9 | Structure of the cysteine-rich region from human EHMT2 |
| 7BTV | 2.0 | Crystal structure of EHMT2 SET domain in complex with compound 5. |
| 7BUC | 2.6 | Crystal structure of EHMT2 SET domain in complex with compound 13 |
| 7DCF | 1.8 | Crystal structure of EHMT2 SET domain in complex with compound 10 |
| 7T7L | 2.2 | Structure of human G9a SET-domain (EHMT2) in complex with covalent inhibitor (Compound 1) |
| 7X73 | 1.49 | Structure of G9a in complex with RK-701 |
| 7XUA | 1.87 | Structure of G9a in complex with compound 10a |
| 7XUB | 2.0 | Structure of G9a in complex with compound 10d |
| 7XUC | 1.67 | Structure of G9a in complex with compound 11a |
| 7XUD | 1.45 | Structure of G9a in complex with compound 26a |
| GO ontology
|
GO term | GO description |
|---|---|---|
| Biological Process | GO:0006306 | DNA methylation |
| Biological Process | GO:0010424 | DNA methylation on cytosine within a CG sequence |
| Biological Process | GO:0048148 | behavioral response to cocaine |
| Biological Process | GO:0071314 | cellular response to cocaine |
| Biological Process | GO:0009267 | cellular response to starvation |
| Biological Process | GO:0071466 | cellular response to xenobiotic stimulus |
| Biological Process | GO:0009566 | fertilization |
| Biological Process | GO:0034968 | histone lysine methylation |
| Biological Process | GO:0007616 | long-term memory |
| Biological Process | GO:1902902 | negative regulation of autophagosome assembly |
| Biological Process | GO:0000122 | negative regulation of transcription by RNA polymerase II |
| Biological Process | GO:0048665 | neuron fate specification |
| Biological Process | GO:0048599 | oocyte development |
| Biological Process | GO:0035265 | organ growth |
| Biological Process | GO:0018027 | peptidyl-lysine dimethylation |
| Biological Process | GO:0036166 | phenotypic switching |
| Biological Process | GO:0044030 | regulation of DNA methylation |
| Biological Process | GO:0006275 | regulation of DNA replication |
| Biological Process | GO:0031060 | regulation of histone methylation |
| Biological Process | GO:0045471 | response to ethanol |
| Biological Process | GO:0060992 | response to fungicide |
| Biological Process | GO:0007286 | spermatid development |
| Biological Process | GO:0007130 | synaptonemal complex assembly |
| Molecular Function | GO:0070742 | C2H2 zinc finger domain binding |
| Molecular Function | GO:0000977 | RNA polymerase II transcription regulatory region sequence-specific DNA binding |
| Molecular Function | GO:0046976 | histone H3K27 methyltransferase activity |
| Molecular Function | GO:0140759 | histone H3K56 methyltransferase activity |
| Molecular Function | GO:0046974 | histone H3K9 methyltransferase activity |
| Molecular Function | GO:0140947 | histone H3K9me2 methyltransferase activity |
| Molecular Function | GO:0002039 | p53 binding |
| Molecular Function | GO:1990841 | promoter-specific chromatin binding |
| Molecular Function | GO:0016279 | protein-lysine N-methyltransferase activity |
| Molecular Function | GO:0001222 | transcription corepressor binding |
| Molecular Function | GO:0008270 | zinc ion binding |
| Cellular Component | GO:0000785 | chromatin |
| Cellular Component | GO:0016607 | nuclear speck |
| Cellular Component | GO:0005654 | nucleoplasm |
| Cellular Component | GO:0005634 | nucleus |
| InterPro
|
InterPro name |
|---|---|
| IPR001214 | SET domain |
| IPR002110 | Ankyrin repeat |
| IPR007728 | Pre-SET domain |
| IPR036770 | Ankyrin repeat-containing domain superfamily |
| IPR038034 | Histone-lysine N-methyltransferase EHMT2, SET domain |
| IPR043550 | Histone-lysine N-methyltransferase EHMT1/EHMT2 |
| IPR046341 | SET domain superfamily |
| Pfam
|
Pfam name |
|---|---|
| PF00856 | SET domain |
| PF05033 | Pre-SET motif |
| PF12796 | Ankyrin repeats (3 copies) |
| Reactome
|
Reactome Name | Node type
|
Reactome Root | Reactome Root Name |
|---|---|---|---|---|
| R-HSA-2559582 | Senescence-Associated Secretory Phenotype (SASP) | Leaf | R-HSA-8953897 | Cellular responses to stimuli |
| R-HSA-3214841 | PKMTs methylate histone lysines | Leaf | R-HSA-4839726 | Chromatin organization |
| R-HSA-427389 | ERCC6 (CSB) and EHMT2 (G9a) positively regulate rRNA expression | Leaf | R-HSA-74160 | Gene expression (Transcription) |
| R-HSA-6804760 | Regulation of TP53 Activity through Methylation | Leaf | R-HSA-74160 | Gene expression (Transcription) |
| R-HSA-73762 | RNA Polymerase I Transcription Initiation | Leaf | R-HSA-74160 | Gene expression (Transcription) |
| R-HSA-8853884 | Transcriptional Regulation by VENTX | Leaf | R-HSA-74160 | Gene expression (Transcription) |
| R-HSA-8953750 | Transcriptional Regulation by E2F6 | Leaf | R-HSA-74160 | Gene expression (Transcription) |
| Location
|
ECO term
|
Pubmed |
|---|---|---|
| Chromosome | ECO:0000269 | PubMed:11316813 |
| Nucleus | ECO:0000269 | PubMed:11316813 |