Protein family
Protein sequence
Protein function
Catalytic activity
EC number
EC number description
2.1.1.-
Transferases;
Transferring one-carbon groups;
Methyltransferases;
2.1.1.367
Transferases;
Transferring one-carbon groups;
Methyltransferases;
[histone H3]-lysine9 N-methyltransferase
PDB | Resolution (Å) | PDB name |
---|---|---|
2O8J | 1.8 | Human euchromatic histone methyltransferase 2 |
3DM1 | 2.4 | Crystal structure of the complex of human chromobox homolog 3 (CBX3) with peptide |
3K5K | 1.7 | Discovery of a 2,4-Diamino-7-aminoalkoxy-quinazoline as a Potent Inhibitor of Histone Lysine Methyltransferase, G9a |
3RJW | 2.56 | Crystal structure of histone lysine methyltransferase g9a with an inhibitor |
4NVQ | 2.03 | Human G9a in Complex with Inhibitor A-366 |
5JHN | 1.67 | Structure of G9a SET-domain with Histone H3K9Ala mutant peptide and bound S-adenosylmethionine |
5JIN | 1.85 | Structure of G9a SET-domain with Histone H3K9M mutant peptide and bound S-adenosylmethionine |
5JIY | 1.48 | Structure of G9a SET-domain with Histone H3K9norLeucine mutant peptide and bound S-adenosylmethionine |
5JJ0 | 1.72 | Structure of G9a SET-domain with Histone H3K9M peptide and excess SAH |
5T0K | 1.7 | Structure of G9a SET-domain with H3K9M mutant peptide and SAM |
5T0M | 1.896 | A histone H3K9M mutation traps histone methyltransferase Clr4 to prevent heterochromatin spreading |
5TTF | 1.72 | Crystal structure of catalytic domain of G9a with MS012 |
5TUY | 2.6 | Structure of human G9a SET-domain (EHMT2) in complex with inhibitor MS0124 |
5V9I | 1.74 | Crystal structure of catalytic domain of G9a with MS0105 |
5VSC | 1.4 | Structure of human G9a SET-domain (EHMT2) in complex with inhibitor 13 |
5VSE | 1.6 | Structure of human G9a SET-domain (EHMT2) in complex with inhibitor 17: N~2~-cyclopentyl-6,7-dimethoxy-N~2~-methyl-N~4~-(1-methylpiperidin-4-yl)quinazoline-2,4-diamine |
6MM1 | 1.9 | Structure of the cysteine-rich region from human EHMT2 |
7BTV | 2.0 | Crystal structure of EHMT2 SET domain in complex with compound 5. |
7BUC | 2.6 | Crystal structure of EHMT2 SET domain in complex with compound 13 |
7DCF | 1.8 | Crystal structure of EHMT2 SET domain in complex with compound 10 |
7T7L | 2.2 | Structure of human G9a SET-domain (EHMT2) in complex with covalent inhibitor (Compound 1) |
7X73 | 1.49 | Structure of G9a in complex with RK-701 |
7XUA | 1.87 | Structure of G9a in complex with compound 10a |
7XUB | 2.0 | Structure of G9a in complex with compound 10d |
7XUC | 1.67 | Structure of G9a in complex with compound 11a |
7XUD | 1.45 | Structure of G9a in complex with compound 26a |
GO ontology | GO term | GO description |
---|---|---|
Biological Process | GO:0006306 | DNA methylation |
Biological Process | GO:0010424 | DNA methylation on cytosine within a CG sequence |
Biological Process | GO:0048148 | behavioral response to cocaine |
Biological Process | GO:0071314 | cellular response to cocaine |
Biological Process | GO:0009267 | cellular response to starvation |
Biological Process | GO:0071466 | cellular response to xenobiotic stimulus |
Biological Process | GO:0009566 | fertilization |
Biological Process | GO:0034968 | histone lysine methylation |
Biological Process | GO:0007616 | long-term memory |
Biological Process | GO:1902902 | negative regulation of autophagosome assembly |
Biological Process | GO:0000122 | negative regulation of transcription by RNA polymerase II |
Biological Process | GO:0048665 | neuron fate specification |
Biological Process | GO:0048599 | oocyte development |
Biological Process | GO:0035265 | organ growth |
Biological Process | GO:0018027 | peptidyl-lysine dimethylation |
Biological Process | GO:0036166 | phenotypic switching |
Biological Process | GO:0044030 | regulation of DNA methylation |
Biological Process | GO:0006275 | regulation of DNA replication |
Biological Process | GO:0031060 | regulation of histone methylation |
Biological Process | GO:0045471 | response to ethanol |
Biological Process | GO:0060992 | response to fungicide |
Biological Process | GO:0007286 | spermatid development |
Biological Process | GO:0007130 | synaptonemal complex assembly |
Molecular Function | GO:0070742 | C2H2 zinc finger domain binding |
Molecular Function | GO:0000977 | RNA polymerase II transcription regulatory region sequence-specific DNA binding |
Molecular Function | GO:0046976 | histone H3K27 methyltransferase activity |
Molecular Function | GO:0140759 | histone H3K56 methyltransferase activity |
Molecular Function | GO:0046974 | histone H3K9 methyltransferase activity |
Molecular Function | GO:0140947 | histone H3K9me2 methyltransferase activity |
Molecular Function | GO:0002039 | p53 binding |
Molecular Function | GO:1990841 | promoter-specific chromatin binding |
Molecular Function | GO:0016279 | protein-lysine N-methyltransferase activity |
Molecular Function | GO:0001222 | transcription corepressor binding |
Molecular Function | GO:0008270 | zinc ion binding |
Cellular Component | GO:0000785 | chromatin |
Cellular Component | GO:0016607 | nuclear speck |
Cellular Component | GO:0005654 | nucleoplasm |
Cellular Component | GO:0005634 | nucleus |
InterPro | InterPro name |
---|---|
IPR001214 | SET domain |
IPR002110 | Ankyrin repeat |
IPR007728 | Pre-SET domain |
IPR036770 | Ankyrin repeat-containing domain superfamily |
IPR038034 | Histone-lysine N-methyltransferase EHMT2, SET domain |
IPR043550 | Histone-lysine N-methyltransferase EHMT1/EHMT2 |
IPR046341 | SET domain superfamily |
Pfam | Pfam name |
---|---|
PF00856 | SET domain |
PF05033 | Pre-SET motif |
PF12796 | Ankyrin repeats (3 copies) |
Reactome | Reactome Name | Node type | Reactome Root | Reactome Root Name |
---|---|---|---|---|
R-HSA-2559582 | Senescence-Associated Secretory Phenotype (SASP) | Leaf | R-HSA-8953897 | Cellular responses to stimuli |
R-HSA-3214841 | PKMTs methylate histone lysines | Leaf | R-HSA-4839726 | Chromatin organization |
R-HSA-427389 | ERCC6 (CSB) and EHMT2 (G9a) positively regulate rRNA expression | Leaf | R-HSA-74160 | Gene expression (Transcription) |
R-HSA-6804760 | Regulation of TP53 Activity through Methylation | Leaf | R-HSA-74160 | Gene expression (Transcription) |
R-HSA-73762 | RNA Polymerase I Transcription Initiation | Leaf | R-HSA-74160 | Gene expression (Transcription) |
R-HSA-8853884 | Transcriptional Regulation by VENTX | Leaf | R-HSA-74160 | Gene expression (Transcription) |
R-HSA-8953750 | Transcriptional Regulation by E2F6 | Leaf | R-HSA-74160 | Gene expression (Transcription) |
Location | ECO term | Pubmed |
---|---|---|
Chromosome | ECO:0000269 | PubMed:11316813 |
Nucleus | ECO:0000269 | PubMed:11316813 |