| Apical cell membrane | Basal cell membrane | Basolateral cell membrane | Cell junction |
| Cell junction, adherens junction | Cell junction, desmosome | Cell junction, focal adhesion | Cell junction, gap junction |
| Cell junction, tight junction | Cell membrane | Cell membrane, sarcolemma | Cell membrane, sarcolemma, T-tubule |
| Cell projection | Cell projection, axon | Cell projection, cilium | Cell projection, cilium, flagellum |
| Cell projection, cilium, flagellum membrane | Cell projection, cilium, photoreceptor outer segment | Cell projection, dendrite | Cell projection, dendritic spine |
| Cell projection, filopodium | Cell projection, growth cone | Cell projection, invadopodium membrane | Cell projection, kinocilium |
| Cell projection, lamellipodium | Cell projection, lamellipodium membrane | Cell projection, microvillus membrane | Cell projection, neuron projection |
| Cell projection, phagocytic cup | Cell projection, podosome | Cell projection, pseudopodium | Cell projection, ruffle |
| Cell projection, ruffle membrane | Cell projection, stereocilium | Cell surface | Chromosome |
| Chromosome, centromere | Chromosome, centromere, kinetochore | Chromosome, telomere | Cleavage furrow |
| Cytolytic granule | Cytoplasm | Cytoplasm, cell cortex | Cytoplasm, cytoskeleton |
| Cytoplasm, cytoskeleton, cilium axoneme | Cytoplasm, cytoskeleton, cilium basal body | Cytoplasm, cytoskeleton, microtubule organizing center | Cytoplasm, cytoskeleton, microtubule organizing center, centrosome |
| Cytoplasm, cytoskeleton, microtubule organizing center, centrosome, centriolar satellite | Cytoplasm, cytoskeleton, microtubule organizing center, centrosome, centriole | Cytoplasm, cytoskeleton, microtubule organizing center, spindle pole body | Cytoplasm, cytoskeleton, spindle |
| Cytoplasm, cytoskeleton, spindle pole | Cytoplasm, cytosol | Cytoplasm, myofibril, sarcomere | Cytoplasm, myofibril, sarcomere, I band |
| Cytoplasm, myofibril, sarcomere, M line | Cytoplasm, myofibril, sarcomere, Z line | Cytoplasm, P-body | Cytoplasm, perinuclear region |
| Cytoplasm, Stress granule | Cytoplasmic granule | Cytoplasmic vesicle | Cytoplasmic vesicle lumen |
| Cytoplasmic vesicle membrane | Cytoplasmic vesicle, autophagosome | Cytoplasmic vesicle, autophagosome membrane | Cytoplasmic vesicle, clathrin-coated vesicle |
| Cytoplasmic vesicle, clathrin-coated vesicle membrane | Cytoplasmic vesicle, phagosome | Cytoplasmic vesicle, phagosome membrane | Cytoplasmic vesicle, secretory vesicle |
| Cytoplasmic vesicle, secretory vesicle lumen | Cytoplasmic vesicle, secretory vesicle membrane | Cytoplasmic vesicle, secretory vesicle, acrosome | Cytoplasmic vesicle, secretory vesicle, acrosome membrane |
| Cytoplasmic vesicle, secretory vesicle, Cortical granule | Cytoplasmic vesicle, secretory vesicle, synaptic vesicle | Cytoplasmic vesicle, secretory vesicle, synaptic vesicle membrane | Dynein axonemal particle |
| Early endosome | Early endosome membrane | Endomembrane system | Endoplasmic reticulum |
| Endoplasmic reticulum lumen | Endoplasmic reticulum membrane | Endoplasmic reticulum-Golgi intermediate compartment | Endoplasmic reticulum-Golgi intermediate compartment membrane |
| Endosome | Endosome membrane | Endosome, multivesicular body | Endosome, multivesicular body membrane |
| Extracellular vesicle | Extracellular vesicle membrane | Golgi apparatus | Golgi apparatus lumen |
| Golgi apparatus membrane | Golgi apparatus, cis-Golgi network membrane | Golgi apparatus, Golgi stack membrane | Golgi apparatus, trans-Golgi network |
| Golgi apparatus, trans-Golgi network membrane | Golgi outpost | Inflammasome | Late endosome |
| Late endosome membrane | Lateral cell membrane | Lipid droplet | Lysosome |
| Lysosome lumen | Lysosome membrane | Melanosome | Membrane |
| Membrane raft | Membrane, caveola | Membrane, clathrin-coated pit | Membrane, coated pit |
| Microsome | Microsome membrane | Midbody | Midbody, Midbody ring |
| Mitochondrion | Mitochondrion inner membrane | Mitochondrion intermembrane space | Mitochondrion matrix |
| Mitochondrion matrix, mitochondrion nucleoid | Mitochondrion membrane | Mitochondrion outer membrane | Myelin membrane |
| Nucleus | Nucleus envelope | Nucleus inner membrane | Nucleus intermembrane space |
| Nucleus matrix | Nucleus membrane | Nucleus outer membrane | Nucleus speckle |
| Nucleus, Cajal body | Nucleus, gem | Nucleus, nuclear pore complex | Nucleus, nucleolus |
| Nucleus, nucleoplasm | Nucleus, PML body | Perikaryon | Peroxisome |
| Peroxisome matrix | Peroxisome membrane | Postsynapse | Postsynaptic cell membrane |
| Postsynaptic density | Postsynaptic recycling endosome membrane | Preautophagosomal structure | Preautophagosomal structure membrane |
| Presynapse | Presynaptic active zone | Presynaptic cell membrane | Recycling endosome membrane |
| Rough endoplasmic reticulum | Sarcoplasmic reticulum | Sarcoplasmic reticulum lumen | Secreted |
| Secreted, extracellular exosome | Secreted, extracellular space | Secreted, extracellular space, extracellular matrix | Secreted, extracellular space, extracellular matrix, basement membrane |
| Synapse | The RNA edited version localizes to the nucleus | Vacuole membrane | Zymogen granule membrane |